GePI - Retrieval of molecular gene interactions from the scientific literature

GePI

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GePI Version 1.0.3

Find Molecular Interactions in the Scientific Literature

This website is free and open to all users and there is no login requirement

List A required

Select File

List B optional

Select File

Filter the results by organism

Add multiple IDs separated by commas

NCBI Taxonomy IDs (List A or B)

NCBI Taxonomy IDs (List A)NCBI Taxonomy IDs (List B)

Filter the result by interaction type

Regulation

Positive Regulation

Negative Regulation

Binding

Localization

Phosphorylation

Include single gene events

Filter the result by minimal factuality of the interactions

negationlowinvestigationmoderatehighassertion

Filter the result by keywords occurring in the context of interactions

ANDOR

Filter the result by keywords occurring in headings of sections and abstracts that contain interactions

Result Statistics

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Interaction Partner Distribution A-List (Pie)

- 5
- 10
- 15

Interaction Partner Distribution A-List (Bars)

Most Frequent Interactions

Interactions with Common Partners

Table View

Interaction result download

Interaction data is being assembled. This may take a while depending on result size and server load. You can use the link below to fetch the download at a later time. The link is valid at least 24h.

Assembling the data of a session will replace previously prepared result files on the server of the same session, even if they have not been downloaded. To begin a new session for a separate download file, hit the Reset Session button to the right of the navigation bar.

Session ID Cookie Consent

This Web application uses a single cookie to remember session state information. This session state is not used for any tracking but is required for the site to provide the offered service. By using this Web site you consent to the storage of an anonymous session ID.

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Maintenance Notice2024-09-05

GePI currently receives an index rebuild. Until this completes, the interaction database is not complete. GePI can be used but results might be incomplete. This will take 3 to 4 days.